Ships have to have custom components in an MMO, the formula to keep people on the hampster wheel is endless grinding for Phat Lewt.
If you can't put that Phat Lewt in your ship, MMO players would not play.
This is not ST. This is UO/EQ/WOW with a ST skin. They don't particularly care about Trek Fans if they can pull in the normal MMO demographic. This means canon will take a far second seat to shiny.
You can expect to see bizzarro uniforms and a multitude of stupid particle effects you can apply to your chars eventually, and probably purchaseable by Microtransactions.. that is the new model, pay a sub AND pay for fluff, and people spend literally thousands per year on that garbage.
If you care to see the future of ST Online, check out Star Wars Galaxies and see how far from canon game developers can really go, and with full blessing of the license holder.. money trumps canon, and these games, with the exception of Eve, are aimed right at that multi million subscriber WoW demographic. MMOs will incorporate elements solely to attract the average MMO player, without regard to anything canon.
I would bet money the average PvP kiddie who rolls Klingon has no clue what era his kewl Enterprise series Raptor is from, and if they did, could care less.