Just remember, using a modded shiplist will only work for single player. Attempting to use a shiplist or ftrlist that is not common to everyone playing in a multyplayer game will provide a cheat message.
The common shiplist for most servers and/or Gamespy Arcade game play is the OP+ v4.0.
If you want an easy installer to get all available content in 1 place with latest scripts and most widely used shiplist would be my OP Enhancement Pack v5.1
You do have to double check the start in path of the desktop shortcuts to ensure that they point to Program Files folder on a 32 bit machine.. I think some shortcuts that I included points to Program Files (x86) folder which is used on a 64 bit system.
Also make sure you launch from the StarfleetOP.exe game file and not the Start Menu shortcut or the SFCOP.exe.. the SFCOP.exe is extremely bugged causing keyboard, shiplist and fighter problems in game.