I'm actually having a similar problem. After installing EDWarppatrols i could only see 5 campaigns for 5 races. I had to remove all the EEk pirate mct files from the campaigns folder plus acouple of others to get 8 campaigns for 8 races, and i do have the Romulan campaign, but none of the pitates campaigns, not a single one.
To Alphageek, you may try unistalling the campaign scripts that were not included in the OP enhancement package 3.2 (thats what i have, i know 4.0 is out but i still got this one) and then reinstalling Edwarppatrols to get the Romulan campaign, you may even get the Pirate campaigns as well who knows. I dont know if it will work, but you can give it a shot, since its working for me and i'm getting the Romulan campaign.
GermzSlap