Couple things I noticed, Jinn, and Included Tracey's name cuz I read she will be editing the map to include terrain, so this is for you both to know:
Your shipyards are fatally anemic. Suggestion: Set econ value in artifex to 50 and run the mouse over every hex.
Havent read your storyline in regards to the map setup (link to storyline? Shouldnt it be stickied?) so with respectful opposition to whatever it is, your current neutral zones, in all fairness, there shouldnt be one seperating the Mirak from the ISC, as they are allies. And there should be one between the Roms and Lyrs because there is one seperating the alliance and coalition. I'd make sure there are 3x neutral zones, one seperating each of the 3x factions from each other.