Nanner,
What are you talking about? If you want people who like one of the games over the other to start liking them equally, that's not going to happen. If you want disagreements to stop, that's not going to happen either. SFC2 players disagree with each other (as I assume SFC3 players do too). That's not a rift in the community, it's democracy, and sometimes it's hard to handle.
I would recommend, possibly, that people don't post negatively on threads that they have no concern for, and therefore, nothing constructive to add. Also, some people need to stop taking things so seriously. They are just games and you're supposed to have fun playing/modding/etc. them.
The politics are what frigs stuff up for me, at times. Trust me, no matter how influential a person or group gets in the Trek fan community, nobody is really ever going to care. (This is not directed at you personally Nanner, just a general statement.)