Don't want to start anything here, but I see this attitude a lot. It's totally fine to have, just want to point something out. Has there every been a post prior to the game getting going, saying "What do you want?". Did they do it for SFC2, OP, or even SFC3? I don't recall seeing that post. I do know that "they" pay attention to what people are calling for, instead of saying "It's time to make a game, guess we'd better go to the people and ask what they want". ATVI owns the rights to do all the trek stuff, and if people are calling for it enough, then they will find a developer to do the game. I'd rather have it sooner than later (like 20 years later). In a lot of places, like game development, I've seen people say things like "I won't give my opinion now, I'll wait until they ask" but "they" don't usually ask, or at least not until far too late to make any major changes, so things go undone. If you want it make it known. You can do it without being a major pest, but best to keep it in the air as much as possible so "they" don't assume it's kind of dead topic. The more things are talked about, the more attention it gets. If ATVI want's to make a killer game, they are obviously would take a cue from what the fans are saying they are wanting.
As for missiles in TNG, or Trek in general, there has been LOADS of documentation about their use and mention in the series. They did exist, along with many other things that others claim aren't "Trek". Oh, well.
On the fire at cloak ship issue, it was fairly effective in BoP, wasn't it? I have the episode, they looked like they were taking some fairly decent hits there. As for the scenes in Nemesis, I haven't seen the film but have heard about it. Wasn't the cloaking device on the Scimitar a new type of cloak that was in fact a "perfect" cloak? Assuming that tech like that doesn't grow on trees most Romulan ships would have a lesser degree of cloak. Heck, the cloak in this "Finally an SFC that is just like Trek" (when in fact it really isnt') game is anything but totally invisible. Why couldn't you be given the option to fire, at a severe disadvantage, at the shadow of the cloaked ship? If you can see it, why not take a pot shot at it, especially in fleet action or when he's staying cloaked a LOT?